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Mini Japanese cotton cheesecake cupcakes with golden tops, dusted with powdered sugar and served in white cupcake liners.

Japanese Cotton Cheesecake Cupcakes Recipe – Light & Fluffy Mini Cheesecakes with a Cloud-Like Texture

These Fluffy Japanese Cotton Cheesecake Cupcakes are a dreamy dessert that combines the richness of cheesecake with the airy texture of soufflé. Made with whipped egg whites, cream cheese, and a touch of lemon, each bite is light, delicate, and melts in your mouth. Perfect for tea time, special occasions, or as a refined sweet treat, these cupcakes are baked in individual portions for easy serving and an elegant presentation. A must-try for fans of Japanese desserts and cloud-like cakes!
Prep Time 20 minutes
Total Time 2 hours 5 minutes
Course Dessert, Mini cheesecakes, Party treats
Cuisine Japanese-inspired
Servings 12 cupcakes
Calories 120 kcal

Equipment

  • Muffin tin
  • Cupcake liners
  • Mixing bowls
  • Hand or stand mixer
  • Whisk
  • Rubber spatula
  • Saucepan
  • Large baking pan (for water bath)

Ingredients
  

  • 6 oz (170g) cream cheese, softened
  • 3 large eggs, separated
  • ¼ cup (60ml) milk
  • ½ cup (100g) sugar (divided)
  • 2 tbsp cake flour or cornstarch
  • 1 tsp vanilla extract
  • Pinch of salt
  • Optional: 1 tsp lemon zest or juice
  • Optional: powdered sugar for dusting

Instructions
 

  • Preheat Oven & Prep Tin Preheat oven to 300°F (150°C). Line a 12-cup muffin tin with paper liners. Prepare a larger baking pan for the water bath.
  • Melt Cream Cheese & Milk In a saucepan over low heat, melt cream cheese with milk until smooth. Remove from heat and let cool slightly.
  • Make Yolk Mixture Whisk in egg yolks, cake flour (or cornstarch), vanilla extract, salt, and optional lemon zest. Mix until smooth.
  • Beat Egg Whites In a clean bowl, beat egg whites to soft peaks. Gradually add sugar and continue beating until glossy and medium-stiff peaks form.
  • Fold Meringue into Yolk Base Gently fold one-third of the meringue into the yolk mixture to lighten it. Then fold in the remaining meringue in two batches, using a spatula and slow, sweeping motions.
  • Fill & Bake Fill cupcake liners about ¾ full. Place muffin tin inside the larger pan and pour hot water into the outer pan to create a water bath.
  • Bake Bake for 25–30 minutes until tops are lightly golden and centers are set but jiggly.
  • Cool Gradually Turn off oven and leave cupcakes inside with the door ajar for 15–20 minutes. This prevents sudden temperature changes that cause collapse.
  • Chill & Serve Cool completely, then refrigerate for at least 1 hour. Dust with powdered sugar before serving.

Notes

  • Use room-temperature ingredients for a smooth batter.
  • Avoid overmixing to preserve airiness.
  • Water bath ensures even baking and prevents cracks.
  • Cool slowly to avoid deflation.
  • Customize with matcha, fruit puree, or chocolate extract for creative variations.
  • Store in fridge up to 4 days or freeze for 1 month.
Keyword cotton cheesecake, fluffy dessert, Japanese cheesecake, jiggly cupcakes, Mini cheesecakes, soufflé cheesecake